Professor Markus Barth
ARC Future Fellow, Head of Ultra-high Field MR Research
Centre for Advanced Imaging
+61 7 334 60349
Researcher biography
Research Interests
Magnetic Resonance (MRI) is a versatile technique that can provide important insights into the body non-invasively and without dangerous side effects with high spatial resolution. A/Prof Barth’s main interests are in the fields of MR method development for applications in neuroimaging with a focus on functional MRI and neurological diseases such as dementia and cancer, as well as cardiac MR.
- Understanding brain activity using functional MRI: blood oxygenation level dependent (BOLD) functional MRI gives a good picture of neural activation and connectivity in the living human brain non-invasively. A/Prof Barth is particularly interested to identify small functional units of the brain, such as cortical layers and columns, in order to better understand brain function by developing very fast functional MRI techniques with the highest spatial resolution possible. Recently, he also addressed important neuroscientific questions such as memory consolidation during sleep and decoding measured functional signals (brain reading). He explored the possibilities of simultaneous acquisition of EEG and fMRI to examine the link between electrophysiology and BOLD task activity and large scale brain networks.
- Ageing and dementia using MR Neuroimaging: Using high magnetic fields (3 and 7 Tesla) spatial resolution of images can be improved significantly. For example, very small venous vessels and small bleedings in the brain can be visualised using specific contrasts, namely susceptibility weighted imaging (SWI) and MR phase. The MR phase information can be used as a very sensitive disease marker, e.g. for tumor angiogenesis or iron accumulation in certain brain structures in Parkinson’s disease.
- Cardiac MR: A new area of research is the exploration of cardiac MR at the ultra-high field strength of 7 Tesla and first results examining the anatomy and function of the human heart look promising.
Keywords: functional MRI, BOLD, 7 Tesla, Neuroimaging
Group Members
See the Barth Group page for current members.
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| Featured projects | Duration |
|---|---|
|
Improved decoding of human brain activity using advanced functional magnetic resonance imaging at ultra-high field strength ARC Future Fellowship |
2015–2018 |
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Verifying the safety and image quality of metallic implants at 7T using single and parallel transmit systems Siemens Ltd |
2014–2017 |
| Diffusion MRI at ultra-high fields | |
|
Integrating high resolution anatomy, structural and functional connectivity at 7T: Towards biomarkers for neurodegenerative diseases UQ Postdoctoral Research Fellowship |
2015–2017 |
| Cardiovascular MRI | |
|
High-resolution brain imaging of basal ganglia function NHMRC Project Grant |
2015–2017 |
| Development of a robust processing pipeline for dementia using 7 Tesla MRI | |
|
ACRF Facility for Molecular Imaging Agents in Cancer Australian Cancer Research Foundation |
2015–2022 |
PhD and MPhil Supervision
- View current and completed supervisions on UQ Researchers.
Publications
Book Chapters
Barnes, Samuel, Barth, Markus and Koopmans, Peter (2011). Automatic vein segmentation and lesion detection: From SWI-MIPs to MR Venograms. In E. Mark Haacke and Jürgen R. Reichenbach (Ed.), Susceptibility Weighted Imaging in MRI: Basic Concepts and Clinical Applications (pp. 605-618) Hoboken, New Jersey: Wiley-Blackwell. doi:10.1002/9780470905203.ch32
Barth, Markus and Rowe, Daniel B. (2011). Functional susceptibility weighted magnetic resonance imaging. In E. Mark Haacke and Jürgen R. Reichenbach (Ed.), Susceptibility Weighted Imaging in MRI: Basic Concepts and Clinical Applications (pp. 561-576) Hoboken, New Jersey: Wiley-Blackwell. doi:10.1002/9780470905203.ch30
Beisteiner, Roland and Barth, Markus (2005). Probleme und Lösungsmöglichkeiten bei Patientenuntersuchungen mit funktioneller Magnetresonanztomographie (fMRT). In Henrik Walter (Ed.), Funktionelle Bildgebung in Psychiatrie und Psychotherapie – Methodische Grundlagen und Klinische Anwendungen (pp. 74-88) Stuttgart: Schattauer Verlag.
Journal Articles
Destruel, Aurelien, Fuentes, Miguel, Weber, Ewald, O'Brien, Kieran, Jin, Jin, Liu, Feng, Barth, Markus and Crozier, Stuart (2019) A numerical and experimental study of RF shimming in the presence of hip prostheses using adaptive SAR at 3 T. Magnetic Resonance in Medicine, 81 6: 3826-3839. doi:10.1002/mrm.27688
Bollmann, Steffen, Kristensen, Matilde Holm, Larsen, Morten Skaarup, Olsen, Mathias Vassard, Pedersen, Mads Jozwiak, Østergaard, Lasse Riis, O’Brien, Kieran, Langkammer, Christian, Fazlollahi, Amir and Barth, Markus (2019) SHARQnet – Sophisticated harmonic artifact reduction in quantitative susceptibility mapping using a deep convolutional neural network. Zeitschrift für Medizinische Physik, . doi:10.1016/j.zemedi.2019.01.001
Stäb, Daniel, Al Najjar, Aiman, O'Brien, Kieran, Strugnell, Wendy, Richer, Jonathan, Rieger, Jan, Niendorf, Thoralf and Barth, Markus (2019) Cardiac magnetic resonance imaging at 7 Tesla. Journal of Visualized Experiments, 143: e55853. doi:10.3791/55853
Berkers, Ruud M. W. J., Ekman, Matthias, van Dongen, Eelco. V., Takashima, Atsuko, Barth, Markus, Paller, Ken. A. and Fernández, Guillén (2018) Cued reactivation during slow-wave sleep induces brain connectivity changes related to memory stabilization. Scientific Reports, 8 1: . doi:10.1038/s41598-018-35287-6
Liu, Yilong, Lyu, Mengye, Barth, Markus, Yi, Zheyuan, Leong, Alex T. L., Chen, Fei, Feng, Yanqiu and Wu, Ed X. (2018) PEC-GRAPPA reconstruction of simultaneous multislice EPI with slice-dependent 2D Nyquist ghost correction. Magnetic Resonance in Medicine, . doi:10.1002/mrm.27546
Destruel, Aurelien, O'Brien, Kieran, Jin, Jin, Liu, Feng, Barth, Markus and Crozier, Stuart (2018) Adaptive SAR mass-averaging framework to improve predictions of local RF heating near a hip implant for parallel transmit at 7 T. Magnetic Resonance in Medicine, . doi:10.1002/mrm.27379
Lyu, Mengye, Barth, Markus, Xie, Victor B., Liu, Yilong, Ma, Xin, Feng, Yanqiu and Wu, Ed X. (2018) Robust SENSE reconstruction of simultaneous multislice EPI with low-rank enhanced coil sensitivity calibration and slice-dependent 2D Nyquist ghost correction. Magnetic Resonance in Medicine, 80 4: 1376-1390. doi:10.1002/mrm.27120
McCombe, Pamela A., Ngo, Shyuan T., Guo, Christine Cong, Fazlollahi, Amir, Bollmann, Saskia, Wang, Liting, Hu, Xintao, Barth, Markus, Salvado, Olivier, Davis, Mark, Ceslis, Amelia, Robinson, Gail, Henderson, Robert D. and Steyn, Frederik J. (2018) Patient with ALS with a novel TBK1 mutation, widespread brain involvement, behaviour changes and metabolic dysfunction. Journal of Neurology, Neurosurgery and Psychiatry, . doi:10.1136/jnnp-2018-318823
Puckett, Alexander M., Bollmann, Saskia, Poser, Benedikt A., Palmer, Jake, Barth, Markus and Cunnington, Ross (2017) Using multi-echo simultaneous multi-slice (SMS) EPI to improve functional MRI of the subcortical nuclei of the basal ganglia at ultra-high field (7T). NeuroImage, 172 886-895. doi:10.1016/j.neuroimage.2017.12.005
Thapaliya, Kiran, Vegh, Viktor, Bollmann, Steffen and Barth, Markus (2017) Assessment of microstructural signal compartments across the corpus callosum using multi-echo gradient recalled echo at 7 T. NeuroImage, 182 407-416. doi:10.1016/j.neuroimage.2017.11.029
Puckett, Alex, Bollmann, Saskia, Barth, Markus and Cunnington, Ross (2017) Measuring the effects of attention to individual fingertips in somatosensory cortex using ultra-high field (7T) fMRI. NeuroImage, 161 179-187. doi:10.1016/j.neuroimage.2017.08.014
Bollmann, Saskia, Puckett, Alexander M., Cunnington, Ross and Barth, Markus (2017) Serial correlations in single-subject fMRI with sub-second TR. NeuroImage, 166 152-166. doi:10.1016/j.neuroimage.2017.10.043
Bertleff, Marco, Domsch, Sebastian, Weingärtner, Sebastian, Zapp, Jascha, O'Brien, Kieran, Barth, Markus and Schad, Lothar R (2017) Diffusion parameter mapping with the combined intravoxel incoherent motion and kurtosis model using artificial neural networks at 3 T. NMR in biomedicine, 30 12: 1-11. doi:10.1002/nbm.3833
Bollmann, Steffen, Robinson, Simon Daniel, O'Brien, Kieran, Vegh, Viktor, Janke, Andrew, Marstaller, Lars, Reutens, David and Barth, Markus (2017) The challenge of bias-free coil combination for quantitative susceptibility mapping at ultra-high field. Magnetic Resonance in Medicine, 79 1: 97-107. doi:10.1002/mrm.26644
Sepehrband, Farshid, O'Brien, Kieran and Barth, Markus (2017) A time-efficient acquisition protocol for multipurpose diffusion-weighted microstructural imaging at 7 Tesla. Magnetic Resonance in Medicine, 78 6: 2170-2184. doi:10.1002/mrm.26608
Dymerska, Barbara, Poser, Benedikt A., Bogner, Wolfgang, Visser, Eelke, Eckstein, Korbinian, Cardoso, Pedro, Barth, Markus, Trattnig, Siegfried and Robinson, Simon D. (2016) Correcting dynamic distortions in 7T echo planar imaging using a jittered echo time sequence. Magnetic Resonance in Medicine, 76 5: 1388-1399. doi:10.1002/mrm.26018
Stäb, Daniel, Bollmann, Steffen, Langkammer, Christian, Bredies, Kristian and Barth, Markus (2016) Accelerated mapping of magnetic susceptibility using 3D planes-on-a-paddlewheel (POP) EPI at ultra-high field strength. NMR in Biomedicine, 30 4: . doi:10.1002/nbm.3620
Staeb, Daniel, Roessler, Juergen, O'Brien, Kieran, Hamilton-Craig, Christian and Barth, Markus (2016) ECG triggering in ultra-high-field cardiovascular MRI. Tomography, 2 3: 167-174. doi:10.18383/j.tom.2016.00193
Dymerska, Barbara, Poser, Benedikt A., Barth, Markus, Trattnig, Siegfried and Robinson, Simon D. (2016) A method for the dynamic correction of B0-related distortions in single-echo EPI at 7T. NeuroImage, 168 321-331. doi:10.1016/j.neuroimage.2016.07.009
Niendorf, Thoralf, Barth, Markus, Kober, Frank and Trattnig, Siegfried (2016) From ultrahigh to extreme field magnetic resonance: where physics, biology and medicine meet. Magnetic Resonance Materials in Physics Biology and Medicine, 29 3: 309-311. doi:10.1007/s10334-016-0564-1
Sood, Surabhi, Urriola, Javier, Reutens, David C., O'Brien, Kieran, Bollmann, Steffen, Barth, Markus and Vegh, Viktor (2016) Echo time-dependent quantitative susceptibility mapping contains information on tissue properties. Magnetic Resonance in Medicine, 77 5: 1946-1958. doi:10.1002/mrm.26281
Markuerkiaga, Irati, Barth, Markus and Norris, David G. (2016) A cortical vascular model for examining the specificity of the laminar BOLD signal. NeuroImage, 132 491-498. doi:10.1016/j.neuroimage.2016.02.073
Zimmer, Fabian, O'Brien, Kieran, Bollmann, Steffen, Pfeuffer, Josef, Heberlein, Keith and Barth, Markus (2016) Pulsed arterial spin labelling at ultra-high field with a B1 +-optimised adiabatic labelling pulse. Magnetic Resonance Materials in Physics, Biology and Medicine, 29 3: 463-473. doi:10.1007/s10334-016-0555-2
Vegh, Viktor, O'Brien, Kieran, Barth, Markus and Reutens, David C. (2015) Selective channel combination of MRI signal phase. Magnetic Resonance in Medicine, 76 5: 1469-1477. doi:10.1002/mrm.26057
Boyacioglu, Rasim, Schul, Jenni, Koopmans, Peter J., Barth, Markus and Norris, David G. (2015) Improved sensitivity and specificity for resting state and task fMRI with multiband multi-echo EPI compared to multi-echo EPI at 7T. NeuroImage, 119 352-361. doi:10.1016/j.neuroimage.2015.06.089
Barth, Markus, Breuer, Felix, Koopmans, Peter J., Norris, David G. and Poser, Benedikt A. (2015) Simultaneous multislice (SMS) imaging techniques. Magnetic Resonance in Medicine, 75 1: 63-81. doi:10.1002/mrm.25897
Langkammer, Christian, Bredies, Kristian, Poser, Benedikt A, Barth, Markus, Reishofer, Gernot, Fan, Audrey Peiwen, Bilgic, Berkin, Fazekas, Franz, Mainero, Caterina and Ropele, Stefan (2015) Fast quantitative susceptibility mapping using 3D EPI and total generalized variation. NeuroImage, 111 622-630. doi:10.1016/j.neuroimage.2015.02.041
Kleinnijenhuis, Michiel, van Mourik, Tim, Norris, David G., Ruiter, Dirk J., van Cappellen van Walsum, Anne-Marie and Barth, Markus (2015) Diffusion tensor characteristics of gyrencephaly using high resolution diffusion MRI in vivo at 7T. NeuroImage, 109 378-387. doi:10.1016/j.neuroimage.2015.01.001
Robinson, Simon Daniel, Dymerska, Barbara, Bogner, Wolfgang, Barth, Markus, Zaric, Olgica, Goluch, Sigrun, Grabner, Gunther, Deligianni, Xeni, Bieri, Oliver and Trattnig, Siegfried (2015) Combining phase images from array coils using a short echo time reference scan (COMPOSER). Magnetic Resonance in Medicine, 77 1: 318-327. doi:10.1002/mrm.26093
Grabner, Günther, Poser, Benedikt A., Fujimoto, Kyoko, Polimeni, Jonathan R., Wald, Lawrence L., Trattnig, Siegfried, Toni, Ivan and Barth, Markus (2014) A study-specific fMRI normalization approach that operates directly on high resolution functional EPI data at 7 Tesla. Neuroimage, 100 710-714. doi:10.1016/j.neuroimage.2014.06.045
Meyer, Matthias C., Janssen, Ronald J., Van Oort, Erik S. B., Beckmann, Christian F. and Barth, Markus (2014) Corrigendum: The quest for EEG power band correlation with ICA derived fMRI resting state networks. Frontiers in Human Neuroscience, 8 SEP: . doi:10.3389/fnhum.2014.00539
Boyacioğlu, Rasim, Schulz, Jenni, Müller, Nils C. J., Koopmans, Peter J., Barth, Markus and Norris, David G. (2014) Whole brain, high resolution multiband spin-echo EPI fMRI at 7 T: a comparison with gradient-echo EPI using a color-word Stroop task. NeuroImage, 97 142-150. doi:10.1016/j.neuroimage.2014.04.011
Goa, Pål E., Koopmans, Peter J., Poser, Benedikt A., Barth, Markus and Norris, David G. (2014) BOLD fMRI signal characteristics of S1- and S2-SSFP at 7 Tesla. Frontiers in Neuroscience, 8 49: 1-6. doi:10.3389/fnins.2014.00049
Niazi A.M., van den Broek P.L.C., Klanke S., Barth M., Poel M., Desain P. and van Gerven M.A.J. (2014) Online decoding of object-based attention using real-time fMRI. European Journal of Neuroscience, 39 2: 319-329. doi:10.1111/ejn.12405
Norris, David G., Boyacioglu, Rasim, Schulz, Jenni, Barth, Markus and Koopmans, Peter J. (2014) Application of PINS radiofrequency pulses to reduce power deposition in RARE/turbo spin echo imaging of the human head. Magnetic Resonance in Medicine, 71 1: 44-49. doi:10.1002/mrm.24991
Schoenmakers, Sanne, Barth, Markus, Heske, Tom and van Gerven, Marcel (2013) Linear reconstruction of perceived images from human brain activity. NeuroImage, 83 951-961. doi:10.1016/j.neuroimage.2013.07.043
Kleinnijenhuis, Michiel, Zerbi, Valerio, Kusters, Benno, Slump, Cornelis H., Barth, Markus and van Cappellen van Walsum, Anne-Marie (2013) Layer-specific diffusion weighted imaging in human primary visual cortex invitro. Cortex, 49 9: 2569-2582. doi:10.1016/j.cortex.2012.11.015
Goa P.E., Poser B.A. and Barth M. (2013) Modeling and suppression of respiration induced B0-fluctuations in non-balanced steady-state free precession sequences at 7 Tesla. Magnetic Resonance Materials in Physics, Biology and Medicine, 26 4: 377-387. doi:10.1007/s10334-012-0343-6
Koopmans P.J., Boyacioglu R., Barth M. and Norris D.G. (2013) Simultaneous multislice inversion contrast imaging using power independent of the number of slices (PINS) and delays alternating with nutation for tailored excitation (DANTE) radio frequency pulses. Magnetic Resonance in Medicine, 69 6: 1670-1676. doi:10.1002/mrm.24402
Meyer M.C., Janssen R.J., van Oort E.S.B., Beckmann C.F. and Barth M. (2013) The quest for EEG power band correlation with ICA derived fMRI resting state networks. Frontiers in Human Neuroscience, 7 JUN: 315.1-315.9. doi:10.3389/fnhum.2013.00315
Boyacioglu R., Beckmann C.F. and Barth M. (2013) An investigation of RSN frequency spectra using ultra-fast generalized inverse imaging (GIN). Frontiers in Human Neuroscience, 7 APR 2013: 156.1-156.7. doi:10.3389/fnhum.2013.00156
Poser B.A., Barth M., Goa P.-E., Deng W. and Stenger V.A. (2013) Single-shot echo-planar imaging with Nyquist ghost compensation: Interleaved dual echo with acceleration (IDEA) echo-planar imaging (EPI). Magnetic Resonance in Medicine, 69 1: 37-47. doi:10.1002/mrm.24222
Meyer M.C., Van Oort E.S.B. and Barth M. (2013) Electrophysiological correlation patterns of resting state networks in single subjects: A combined EEG-fMRI study. Brain Topography, 26 1: 98-109. doi:10.1007/s10548-012-0235-0
Boyacioglu, Rasim and Barth, Markus (2013) Generalized inverse imaging (GIN): Ultrafast fMRI with physiological noise correction. Magnetic Resonance in Medicine, 70 4: 962-971. doi:10.1002/mrm.24528
van Dongen, Eelco V, Thielen, Jan-Willem, Takashima, Atsuko, Barth, Markus and Fernandez, Guillen (2012) Sleep supports selective retention of associative memories based on relevance for future utilization. PLoS ONE, 7 8: e43426.1-e43426.6. doi:10.1371/journal.pone.0043426
van Dongen, Eelco V., Takashima, Atsuko, Barth, Markus, Zapp, Jascha, Schad, Lothar R., Paller, Ken A. and Fernandez, Guillén (2012) Memory stabilization with targeted reactivation during human slow-wave sleep. Proceedings of the National Academy of Sciences of the United States of America, 109 26: 10575-10580. doi:10.1073/pnas.1201072109
Kleinnijenhuis, Michael, Barth, Markus, Alexander, Daniel C., van Cappellen van Walsum, Anne-Marie and Norris, David G. (2012) Structure Tensor Informed Fiber Tractography (STIFT) by combining gradient echo MRI and diffusion weighted imaging. NeuroImage, 59 4: 3941-3954. doi:10.1016/j.neuroimage.2011.10.078
Koopmans, Peter J., Boyacioglu, Rasim, Barth, Markus and Norris, David G. (2012) Whole brain, high resolution spin-echo resting state fMRI using PINS multiplexing at 7T. NeuroImage, 62 3: 1939-1946. doi:10.1016/j.neuroimage.2012.05.080
Visser, Eelke, Poser, Benedikt A., Barth, Markus and Zwiers, Marcel P. (2012) Reference-free unwarping of EPI data using dynamic off-resonance correction with multiecho acquisition (DOCMA). Magnetic Resonance in Medicine, 68 4: 1247-1254. doi:10.1002/mrm.24119
van Dongen, Eelco V., Takashima, Atsuko, Barth, Markus and Fernandez, Guillén (2011) Functional connectivity during light sleep is correlated with memory performance for face-location associations. NeuroImage, 57 1: 262-270. doi:10.1016/j.neuroimage.2011.04.019
Koopmans, Peter J., Barth, Markus, Orzada, Stephan and Norris, David G. (2011) Multi-echo fMRI of the cortical laminae in humans at 7T. NeuroImage, 56 3: 1276-1285. doi:10.1016/j.neuroimage.2011.02.042
Norris, David G., Koopmans, Peter J., Boyacioglu, Rasim and Barth, Markus (2011) Power independent of number of slices (PINS) radiofrequency pulses for low-power simultaneous multislice excitation. Magnetic Resonance in Medicine, 66 5: 1234-1240. doi:10.1002/mrm.23152
Barth, Markus and Poser, Benedikt A. (2011) Advances in high-field bold fmri. Materials, 4 11: 1941-1955. doi:10.3390/ma4111941
Theysohn, Jens M., Kraff, Oliver, Maderwald, Stefan, Barth, Markus, Ladd, Susanne C., Forsting, Michael, Ladd, Mark E. and Gizewski, Elke R. (2011) 7 Tesla MRI of microbleeds and white matter lesions as seen in vascular dementia. Journal of Magnetic Resonance Imaging, 33 4: 782-791. doi:10.1002/jmri.22513
Barth, Markus, Meyer, Heiko, Kannengiesser, Stephan A. R., Polimeni, Jonathan R., Wald, Lawrence L. and Norris, David G. (2010) T2-weighted 3D fMRI using S2-SSFP at 7 tesla. Magnetic Resonance in Medicine, 63 4: 1015-1020. doi:10.1002/mrm.22283
Grabner, Gunther, Haubenberger, Dietrich, Rath, Jakob, Beisteiner, Roland, Auff, Eduard, Trattnig, Siegfried and Barth, Markus (2010) A population-specific symmetric phase model to automatically analyze susceptibility-weighted imaging (SWI) phase shifts and phase symmetry in the human brain. Journal of Magnetic Resonance Imaging, 31 1: 215-220. doi:10.1002/jmri.22013
Poser, B. A., Koopmans, P. J., Witzel, T., Wald, L. L. and Barth, M. (2010) Three dimensional echo-planar imaging at 7 Tesla. NeuroImage, 51 1: 261-266. doi:10.1016/j.neuroimage.2010.01.108
Grabner, Gunther, Trattnig, Siegfried and Barth, Markus (2010) Filtered deconvolution of a simulated and an in vivo phase model of the human brain. Journal of Magnetic Resonance Imaging, 32 2: 289-297. doi:10.1002/jmri.22246
Koopmans, Peter J., Barth, Markus and Norris, David G. (2010) Layer-specific BOLD activation in human V1. Human Brain Mapping, 31 9: 1297-1304. doi:10.1002/hbm.20936
Dammann,Philipp, Barth, Markus, Zhu, Yuan, Maderwald, Stefan, Schlamann, Marc, Ladd, Mark E. and Sure, Ulrich (2010) Susceptibility weighted magnetic resonance imaging of cerebral cavernous malformations: prospects, drawbacks, and first experience at ultra-high field strength (7-Tesla) magnetic resonance imaging.. Neurosurgical focus, 29 3: 1-7. doi:10.3171/2010.6.FOCUS10130
Witoszynskyj, Stephan, Rauscher, Alexander, Reichenbach, Jürgen R. and Barth, Markus (2009) Phase unwrapping of MR images using ΦUN - A fast and robust region growing algorithm. Medical Image Analysis, 13 2: 257-268. doi:10.1016/j.media.2008.10.004
Rauscher, Alexander, Barth, Markus, Herrmann, Karl-Heinz, Witoszynskyj, Stephan, Deistung, Andreas and Reichenbach, Jüergen R. (2008) Improved elimination of phase effects from background field inhomogeneities for susceptibility weighted imaging at high magnetic field strengths. Magnetic Resonance Imaging, 26 8: 1145-1151. doi:10.1016/j.mri.2008.01.029
Koopmans, Peter J., Manniesing, Rashindra, Niessen, Wiro J., Viergever, Max A. and Barth, Markus (2008) MR venography of the human brain using susceptibility weighted imaging at very high field strength. Magnetic Resonance Materials in Physics, Biology and Medicine, 21 1-2: 149-158. doi:10.1007/s10334-007-0101-3
Stadler, Alfred, Jakob, Peter M., Griswold, Mark, Stiebellehner, Leopold, Barth, Markus and Bankier, Alexander A. (2008) T1 mapping of the entire lung parenchyma: Influence of respiratory phase and correlation to lung function test results in patients with diffuse lung disease. Magnetic Resonance in Medicine, 59 1: 96-101. doi:10.1002/mrm.21446
Barth, M. and Norris, D. G. (2007) Very high-resolution three-dimensional functional MRI of the human visual cortex with elimination of large venous vessels. NMR in Biomedicine, 20 5: 477-484. doi:10.1002/nbm.1158
Geissler, Alexander, Gartus, Andreas, Foki, Thomas, Tahamtan, Amir Reza, Beisteiner, Roland and Barth, Markus (2007) Contrast-to-noise ratio (CNR) as a quality parameter in fMRI. Journal of Magnetic Resonance Imaging, 25 6: 1263-1270. doi:10.1002/jmri.20935
Gartus, Andreas, Geissler, Alexander, Foki, Thomas, Tahamtan, Amir Reza, Pahs, Gerald, Barth, Markus, Pinker, Katja, Trattnig, Siegfried and Beisteiner, Roland (2007) Comparison of fMRI coregistration results between human experts and software solutions in patients and healthy subjects. European Radiology, 17 6: 1634-1643. doi:10.1007/s00330-006-0459-z
Noebauer-Huhmann, Iris-Melanie, Pinker, Katja, Barth, Markus, Mlynarik, Vladimir, Ba-Ssalamah, Ahmed, Saringer, Walter F., Weber, Michael, Benesch, Thomas, Witoszynskyj, Stephan, Rauscher, Alexander, Reichenbach, Juergen and Trattnig, Siegfried (2006) Contrast-enhanced, high-resolution, susceptibility-weighted magnetic resonance imaging of the brain: dose-dependent optimization at 3 Tesla and 1.5 Tesla in healthy volunteers. Investigative Radiology, 41 3: 249-255. doi:10.1097/01.rli.0000188360.24222.5e
Hamans, Bob C., Barth, Markus, Leenders, William P. and Heerschap, Arend (2006) Contrast Enhanced Susceptibility Weighted Imaging (CE-SWI) of the Mouse Brain Using Ultrasmall Superparamagnetic Ironoxide Particles (USPIO). Zeitschrift Fur Medizinische Physik, 16 4: 269-274.
Roessler, K., Donat, M., Lanzenberger, R., Novak, K., Geissler, A., Gartus, A., Tahamtan, A. R., Milakara, D., Czech, T., Barth, M., Knosp, E. and Beisteiner, R. (2005) Evaluation of preoperative high magnetic field motor functional MRI (3 Tesla) in glioma patients by navigated electrocortical stimulation and postoperative outcome. Journal of Neurology, Neurosurgery and Psychiatry, 76 8: 1152-1157. doi:10.1136/jnnp.2004.050286
Rauscher, Alexander, Sedlacik, Jan, Barth, Markus, Haacke, E. Mark and Reichenbach, Juergen R. (2005) Nonnvasive assessment of vascular architecture and function during modulated blood oxygenation using susceptibility weighted magnetic resonance imaging. Magnetic Resonance in Medicine, 54 1: 87-95. doi:10.1002/mrm.20520
Stadler, Alfred, Jakob, Peter M., Griswold, Mark, Barth, Markus and Bankier, Alexander A. (2005) T1 mapping of the entire lung parenchyma: influence of the respiratory phase in healthy individuals. Journal of Magnetic Resonance Imaging, 21 6: 759-764. doi:10.1002/jmri.20319
Rauscher, A, Sedlacik, J, Barth, M, Mentzel, HJ and Reichenbach, JR (2005) Magnetic susceptibility-weighted MR phase imaging of the human brain. American Journal of Neuroradiology, 26 4: 736-742.
Lanzenberger, Rupert, Wiest, Gerald, Geissler, Alexander, Barth, Markus, Ringl, Helmut, Wober, Christian, Gartus, Andreas, Baumgartner, Christoph and Beisteiner, Roland (2005) FMRI reveals functional cortex in a case of inconclusive Wada testing. Clinical Neurology and Neurosurgery, 107 2: 147-151. doi:10.1016/j.clineuro.2004.06.006
Geissler, Alexander, Lanzenberger, Rupert, Barth, Markus, Tahamtan, Amir Reza, Milakara, Denny, Gartus, Andreas and Beisteiner, Roland (2005) Influence of fMRI smoothing procedures on replicability of fine scale motor localization. NeuroImage, 24 2: 323-331. doi:10.1016/j.neuroimage.2004.08.042
Windischberger, Christian, Robinson, Simon, Rauscher, Alexander, Barth, Markus and Moser, Ewald (2004) Robust field map generation using a triple-echo acquisition. Journal of Magnetic Resonance Imaging, 20 4: 730-734. doi:10.1002/jmri.20158
Shimizu, Yu, Barth, Markus, Windischberger, Christian, Moser, Ewald and Thurner, Stefan (2004) Wavelet-based multifractal analysis of fMRI time series. NeuroImage, 22 3: 1195-1202. doi:10.1016/j.neuroimage.2004.03.007
Dimitriadou, Evgenia, Barth, Markus, Windischberger, Christian, Hornik, Kurt and Moser, Ewald (2004) A quantitative comparison of functional MRI cluster analysis. Artificial Intelligence in Medicine, 31 1: 57-71. doi:10.1016/j.artmed.2004.01.010
Trattnig, S., Ba-Ssalamah, A., Nobauer-Huhmann, I. M., Barth, M., Pinker, K. and Mlynarik, V. (2004) Kontrastmittelanwendung auf Hochfeld-(3 T-)MRT. Der Radiologe, 44 1: 56-64. doi:10.1007/s00117-003-0964-x
Windischberger, C, Barth, M, Lamm, C, Schroeder, L, Bauer, H, Gur, RC and Moser, E (2003) Fuzzy cluster analysis of high-field functional MRI data. Artificial Intelligence in Medicine, 29 3: 203-223. doi:10.1016/S0933-3657(02)00072-6
Trattnig, Siegfried, Ba-Ssalamah, Ahmed, Noebauer-Huhmann, Iris-Melanie, Barth, Markus, Wolfsberger, Stefan, Pinker, Katja and Knosp, Engelbert (2003) MR contrast agent at high-field MRI (3 Tesla). Topics in Magnetic Resonance Imaging, 14 5: 365-375. doi:10.1097/00002142-200310000-00003
Rauscher, Alexander, Barth, Markus, Reichenbach, Jürgen R., Stollberger, Rudolf and Moser, Ewald (2003) Automated unwrapping of MR phase images applied to BOLD MR-venography at 3 tesla. Journal of Magnetic Resonance Imaging, 18 2: 175-180. doi:10.1002/jmri.10346
Thurner, S, Windischberger, C, Moser, E, Walla, P and Barth, M (2003) Scaling laws and persistence in human brain activity. Physica A-Statistical Mechanics and its Applications, 326 3-4: 511-521. doi:10.1016/S0378-4371(03)00279-6
Barth, M, Nobauer-Huhmann, IM, Reichenbach, JR, Mlynarik, V, Schoggl, A, Matula, C and Trattnig, S (2003) High-resolution three-dimensional contrast-enhanced blood oxygenation level-dependent magnetic resonance venography of brain tumors at 3 Tesla: First clinical experience and comparison with 1.5 Tesla. Investigative Radiology, 38 7: 409-414. doi:10.1097/01.RLI.0000069790.98435.e7
Klarhofer, M, Barth, M and Moser, E (2002) Comparison of multi-echo spiral and echo planar imaging in functional MRI. Magnetic Resonance Imaging, 20 4: 359-364. doi:10.1016/S0730-725X(02)00505-2
Nobauer-Huhmann, Iris Melanie, Ba-Ssalamah, Ahmed, Mlynarik, Vladimir, Barth, Markus, Schoggl, Alexander, Heimberger, Karl, Matula, Christian, Fog, Amura, Kaider, Alexandra and Trattnig, Siegfried (2002) Magnetic resonance imaging contrast enhancement of brain tumors at 3 tesla versus 1.5 tesla. Investigative Radiology, 37 3: 114-119. doi:10.1097/00004424-200203000-00003
Barth, Markus, Windischberger, Christian, Klarhofer, Markus and Moser, Ewald (2001) Characterization of BOLD activation in multi-echo fMRI data using fuzzy cluster analysis and a comparison with quantitative modeling. NMR in Biomedicine, 14 7-8: 484-489. doi:10.1002/nbm.737
Reichenbach J.R., Barth M., Haacke E.M., Klarhofer M., Kaiser W.A. and Moser E. (2000) High-resolution MR venography at 3.0 Tesla. Journal of Computer Assisted Tomography, 24 6: 949-957. doi:10.1097/00004728-200011000-00023
Barth, Markus, Windischberger, Christian and Moser, Ewald (1999) Spiral imaging and fuzzy cluster analysis in single-trial fMRI. NeuroImage, 9 6 PART II: .
Windischberger, Christian, Barth, Markus, Beisteiner, Roland, Cunnington, Ross, Edward, Vinod, Erdler, Markus, Kaindl, Thomas and Moser, Ewald (1999) Fuzzy clustering as a model-free analysis method in single-event fMRI. NeuroImage, 9 6 PART II: .
Cunnington, Ross, Windischberger, Christian, Barth, Marcus, Beisteiner, Roland, Edward, Vinod, Erdler, Marcus, Kaindl, Thomas and Moser, Ewald (1999) Single-event functional MRI of supplementary and primary motor cortical areas. NeuroImage, 9 6 PART II: .
Barth, M, Metzler, A, Klarhofer, M, Roll, S, Moser, E and Leibfritz, D (1999) Functional MRI of the human motor cortex using single-shot, multiple gradient-echo spiral imaging. Magnetic Resonance Imaging, 17 9: 1239-1243. doi:10.1016/S0730-725X(99)00087-9
Barth, M, Reichenbach, JR, Venkatesan, R, Moser, E and Haacke, EM (1999) High-resolution, multiple gradient-echo functional MRI at 1.5 T. Magnetic Resonance Imaging, 17 3: 321-329. doi:10.1016/S0730-725X(98)00191-X
Moser, E, Baumgartner, R, Barth, M and Windischberger, C (1999) Explorative signal processing in functional MR imaging. International Journal of Imaging Systems and Technology, 10 2: 166-176. doi:10.1002/(SICI)1098-1098(1999)10:2<166::AID-IMA7>3.0.CO;2-F
Windischberger, C., Barth, M. and Moser, E. (1998) 256 by 256 single shot EPI at 3 Tesla. NeuroImage, 7 4 PART II: S580.
Beisteiner, R., Windischberger, C., Edward, V., Kaindl, Th, Barth, M., Erdler, M. and Moser, E. (1998) Is MEG superior to EPI FMRI in localizing neuronal activity?. NeuroImage, 7 4 PART II: .
Barth, Markus. and Moser, Ewald. (1997) Proton NMR relaxation times of human blood samples at 1.5 T and implications for functional MRI. Cellular and Molecular Biology, 43 5: 783-791.
Trattnig S., Kontaxis G., Breitenseher M., Czerny Ch., Rand T., Turetschek K., Barth M. and Imhof H. (1997) Magnetic resonance imaging on a low-field system (0.2 T): Comparison with a 1.0-T system. Radiologe, 37 10: 773-777. doi:10.1007/s001170050281
Diemling, M, Barth, M and Moser, E (1997) Quantification of signal changes in gradient recalled echo FMRI. Magnetic Resonance Imaging, 15 7: 753-762. doi:10.1016/S0730-725X(97)00030-1
Barth, M, Diemling, M and Moser, E (1997) Modulation of signal changes in gradient-recalled echo functional MRI with increasing echo time correlate with model calculations. Magnetic Resonance Imaging, 15 7: 745-752. doi:10.1016/S0730-725X(97)00043-X
Conference Papers
Liu, Yilong, Lyu, Mengye, Barth, Markus, Yi, Zheyuan, Leong, Alex T. L., Chen, Fei, Feng, Yanqiu and Wu, Ed X. (2019). PEC-GRAPPA reconstruction of simultaneous multislice EPI with slice-dependent 2D Nyquist ghost correction. In: Annual Meeting of International-Society-for-Magnetic-Resonance-in-Medicine (ISMRM), Paris, France, (1924-1934). 18-22 June 2018. doi:10.1002/mrm.27546
Thapaliya, Kiran, Vegh, Viktor, Bollmann, Steffen and Barth, Markus (2018). Myelin water fraction across the corpus callosum using multi-echo gradient echo at 7T - influence of model settings and flip angle. In: ISMRM, Paris, France, (). 16-21 June 2018.
Thapaliya, Kiran, Barth, Markus, Bollmann, Steffen, Reutens, David and Vegh, Viktor (2018). 7T GRE-MRI frequency shifts obtained from signal compartments can differentiate normal from dysplastic tissue in focal epilepsy. In: ISMRM, Paris, France, (). 16-21 June 2018.
Sood, Surabhi, Reutens, David, Kadamangudi, Shrinath, Barth, Markus and Vegh, Viktor (2018). Echo time dependence in temporal frequency shift curves at 3T and 7T. In: ISMRM, Paris, France, (). 16-21 June 2018.
Bollmann, Steffen, Kelly, Samuel, Vegh, Viktor, Rodell, Anders, Tesiram, Yas, Barth, Markus and O'Brien, Kieran (2018). Improving FLAIR SAR efficiency by predicting B1-maps at 7T from a standard localizer scan using deep convolutional neural networks. In: ISMRM, Paris, France, (). 17-21 June 2018.
J. Munk, N. Jacobsen, M. Plocharski, L. R. Østergaard, M. Barth, A. Janke and S. Bollmann (2017). Contrast Matching of Ultra-High Resolution Minimum Deformation Averaged MRI Models to Facilitate Computation of a Multi-Modal Model of the Human Brain. In: Proc. Intl. Soc. Mag. Reson. Med.. ISMRM, Honolulu, (). 22-27 April 2017.
Saskia Bollmann, Steffen Bollmann, Alex Puckett, Andrew Janke and Markus Barth (2017). Non-Linear Realignment Using Minimum Deformation Averaging for Single-Subject FMRI at Ultra-High Field. In: Proc. Intl. Soc. Mag. Reson. Med. 25. ISMRM, Honolulu, (). 22-27 April 2017.
Bollmann, Steffen, Andrew Janke and Markus Barth (2017). Deep Mapping: Using deep convolutional neural networks to estimate quantitative T1 maps trained on a 7 T minimum deformation average model. In: Proc. Intl. Soc. Mag. Reson. Med. 25. ISMRM, Honolulu, (). 22-27 April 2017.
Kiran Thapaliya, S. Bollmann, V. Vegh and M. Barth (2017). Signal Compartments Mapped from Multi-Echo Gradient Recalled Echo Data Vary across the Corpus Callosum. In: Proc. Intl. Soc. Mag. Reson. Med. 25. ISMRM, Honolulu, (). 22-27 April 2017.
Sood, Surabhi, Urriola, Javier, Reutens, David C., Bollmann, Steffen, O'Brien, Kieran, Barth, Markus and Vegh, Viktor (2016). Contribution of cortical layer cytoarchitecture to quantitative susceptibility mapping. In: Organisation of the Human Brain Mapping, Geneva, Switzerland, (). 26-30 June, 2016.
Sood, Surabhi, Urriola, Javier, Reutens, David C., Bollmann, Steffen, O'Brien, Kieran, Barth, Markus and Vegh, Viktor (2016). Echo time based influences on quantitative susceptibility mapping. In: International Symposium on Magnetic Resonance in Medicine, Singapore, (). May.
Janke, Andrew L ., O'Brian, Kieran, Bollmann, Steffen, Kober, Tobias and Barth, Markus (2016). A 7T Human Brain Microstructure Atlas by Minimum Deformation Averaging at 300μm. In: International Society for Magnetic Resonance in Medicine, Singapore, (). 7-13 May 2016.
Vegh, Viktor, O'Brien, Kieran, Reutens, David C., Bollmann, Steffen and Barth, Markus (2016). Selective combination of MRI phase images. In: International Symposium on Magnetic Resonance in Medicine, Singapore, (). 7-13 May, 2016.
Bollmann, Steffen, Zimmer, Fabian, O'Brien, Fabian, Vegh, Viktor and Barth, Markus (2015). When to perform channel combination in 7 Tesla quantitative susceptibility mapping?. In: Organization of the Human Brain Mapping, Hawaii Convention Centre, Honolulu, Hawaii, (). May.
Dataset Collections
Bollmann, Steffen, Janke, Andrew, Marstaller, Lars, Reutens, David, O'Brien, Kieran and Barth, Markus (2017): Turbo Spin Echo average 7T model. The University of Queensland. Dataset. doi:10.14264/uql.2017.267
Bollmann, Steffen, Janke, Andrew, Marstaller, Lars, Reutens, David, O'Brien, Kieran and Barth, Markus (2017): MP2RAGE T1-weighted average 7T model. The University of Queensland. Dataset. doi:10.14264/uql.2017.266
Bollmann, Steffen, Janke, Andrew, Marstaller, Lars, Reutens, David, O'Brien, Kieran and Barth, Markus (2017): GRE and QSM average 7T model. The University of Queensland. Dataset. doi:10.14264/uql.2017.178